PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011010-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 460aa    MW: 48658.1 Da    PI: 6.3891
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011010-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.4e-12266311555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  WALNUT_00011010-RA 266 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 311
                         99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-17259321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.35E-13259315No hitNo description
PROSITE profilePS5088817.39261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16263320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9266311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MQPCSREMQG INSLLNPTQI SLQDLHDQQQ QQQSQIQSSQ IHHQVQNSHF DPTSHDDFLE  60
QMFSTIPPPS CSWSDLNPAK TPAAWDLKPR DLSDDTAPLN PDNNNNVAFQ FDDSANLASK  120
LRNHQISGSA KSAAAAAAMM LQQQLLMSRG VAGAGDSGLI PMPLSLGSAD DNVDGSSSFK  180
SPNLRAHDDS VQALFNGFAG SMHGPGQTPN QTQHFHHSQG GPVQGQNYGS PAAAMNQAPA  240
SGSAGSAPAQ PRQRVRARRG QATDPHSIAE RLRRERIAER MKALQELVPN ANKTDKASML  300
DEIIDYVKFL QLQVKVLSMS RLGGAAAVAP LVADMSPEGG GDCVQAGGGN GGAQRNQTAS  360
SNDTLMVTEH QVAKLMEEDM GSAMQYLQGK GLCLMPISLA TAISTATCHS RNPTNRPVLQ  420
PNGGEGPSSP SMSVLTVQSA TLGNGTVDAS VKDSTSVSKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270275RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656596.10.0PREDICTED: uncharacterized protein LOC100243222 isoform X1
SwissprotQ9ZUG93e-89BH066_ARATH; Transcription factor bHLH66
TrEMBLF6HYI30.0F6HYI3_VITVI; Putative uncharacterized protein
STRINGVIT_11s0037g00040.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.17e-59LJRHL1-like 1